Petri Nets for Modeling and Analyzing Biochemical Reaction Networks
نویسندگان
چکیده
Petri nets have been widely used to model and analyze biochemical reaction networks. This chapter gives an overview of di↵erent types of Petri nets within a unifying Petri net framework that comprises the qualitative, stochastic, continuous and hybrid paradigms at both uncolored and colored levels. The Petri net framework permits to investigate one and the same biological reaction network with di↵erent modeling abstractions in various complementary ways. We describe the use of the framework to investigate biochemical reaction networks with the help of the unifying Petri net tool, Snoopy, and his close friends Charlie and Marcie. The repressilator example serves as running case study.
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